Friday, March 4, 2011

DNA polymorphism provides insight into human origin

DNA polymorphism provides new insights into the origin and history of human populations, Lalji Singh, Bhatnagar Fellow in CSIR and the Centre for Cellular and Molecular Biology, Hyderabad, has said.

Delivering a lecture on “Mystery of our origins” during an open house and exhibition organised at the Yogi Vemana University on International Science Day, Dr. Singh said modern humans arose about 1.50-lakh years ago, possibly in East Africa and colonised the Kalahari desert and Central African rain forest in Africa. 

Oazeh fossils and a skull dating back to 90,000 years found in Israel indicated that early humans ventured out of Africa briefly. Immigration of people can be tracked based on errors (mutations) during copying of DNA and the mutations slowly accumulate in certain regions of the DNA, he stated.

Whenever a population splits and there is no intermingling of the splits, different populations accumulate different sets of mutations depending on the geographical location and the environment around them, he said. Based on them, family trees of different lineages and shared genealogy of humankind can be constructed and dates to the branch points approximately assigned.

Mitochondrial DNA (mtDNA) is a genetic element passed down only through women, while the DNA of Y-chromosome is passed on to next generations only through men, Dr. Singh said. Based on the mutations, various sections known as ‘haplogroups' have been identified and several of those groups were specific to African populations (L2 and L3 mtDNA signature) about 85,000 years ago, which now represent more than two-thirds of female lineages throughout most of Africa.

The origin of the Andaman “Negrito” and Nicobar “Mongoloid” populations stimulated a wide range of speculation, but their origins were still a mystery, he remarked. He wondered if the islanders could serve as a window to the past showing how humans were hundred thousand years ago when the first modern humans left Africa. To address these questions, the complete mitochondrial DNA (16,569 pairs) of five Onge, five Great Andamanese and five Nicobarese were analysed, he said.

The Onge and Great Andamanese are unique in their origin and novel mutations found in mtDNA of the tribes helped into two unique branches in the human evolutionary tree, he said.

Dr. Singh, who established the Centre for DNA Fingerprinting and Diagnostics (CDFD), Laboratory for Conservation of Endangered Species (LaCONES) and Clinical Research Facility at Hyderabad, said their study suggested that two ancient maternal lineages had evolved in Andaman Islands in genetic isolation independently, possibly due to initial penetration of the northern coastal areas of the Indian Ocean by modern humans in their out-of-Africa migration about 50,000 to 70,000 years ago.

How mushrooms evolved alongside humans

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A researcher at Oregon State University and her team has published one of the most detailed genetic analyses ever done on morels or mushrooms, to help identify their ancestry, show how they evolved and what conservation policies may be needed to manage and protect this valuable resource.

The study was done by scientists from OSU, the U.S. Department of Agriculture, Eastern Illinois University and private industry.

Nancy Weber found that true morels split off from all other fungal species 129 million years ago, during the beginning of the Cretaceous Period.

Since then, morels have evolved into 177 related species, and western North America - particularly the Pacific Northwest - has been an evolutionary hot spot.

"Oddly enough, most animal species aren't particularly attracted to morels," Weber said.

"A few slugs and other things will eat them. But humans have probably been eating them for about as long as there have been humans."

And if not dinosaurs, humans sure are big fans of mushrooms.

The new genetic analysis has told scientists that morels are very old, but not at all the oldest of 1.5 million species of fungi.

They are found widely around the world, probably travelled with the continents as they drifted apart, but still look pretty much the same way they did millions of years ago.

The study is published in Fungal Genetics and Biology.

Human activity displaces predators more than prey

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A new study from the University of Calgary has suggested that human activity displaces predators more than prey.

It found that while predatory animals like wolves, cougars, and bears tend to stay away when humans are in the area, prey like elk, moose, and deer are more likely to stick around.

The team deployed 43 digital camera traps at random locations along roads and trails on the eastern slopes of the Rocky Mountains in southwestern Alberta from April to November 2008 to examine how predator-prey interactions and use of space were influenced by human activity.

Large predator animals in the study area consisted of wolves, black bears, grizzly bears and cougars, while the large herbivore species monitored were moose, elk, white-tailed deer, mule deer and cattle.

They found that humans and prey co-occurred together more often than humans and predators at camera sites, and that predators and prey were less likely to be in the same area if there was heavy human traffic.

Their results showed that prey were three times more abundant on roads and trails used by more than 32 humans a day, but predators were less abundant on roads and trails used by more than 18 humans a day.

"The research shows that humans might displace large mammalian predators," said Tyler Muhly, corresponding author of the paper.

"This provides a positive indirect effect on large mammalian prey species that are less sensitive to humans," he added.

The research suggested that limiting human use of roads and trails in wildlife areas to less than 18 people a day might reduce the effects on the large mammalian food web, but a growing human population means that the effects on wildlife food webs will likely increase.

The study has been published on March 4 in PLoS ONE.